The impact of structured strip row refugia (varying from 10% to 50%) in the Bt cotton crops JKCH1947Bt (producing one toxin, Cry1Ac) and MRC7017BGII (producing two toxins, Cry1Ac and Cry2Ab) on the pest complex and cotton yield was studied. During the cropping season (June 2008 to November 2008), sucking pest incidence was negligible. However, the incidences of spotted bollworm, Earias vittella, and the leafroller, Sylepta derogata, were high on the non-Bt cotton. The total cotton seed yield of the Bt crop plus the refuge decreased proportionately with respect to the increase in proportion of non-Bt cotton. Total cotton production decreased significantly when 40% non-Bt cotton was planted as refuge. These studies showed that a refuge of up to 30% non-Bt cotton in JKCH1947Bt and up to 20% non-Bt cotton in MRC7017Bt did not affect total seed cotton yield compared to 100% Bt cotton.